Independent, Incidence Independent and Weakly Reversible Decompositions of Chemical Reaction Networks

نویسندگان

چکیده

Chemical reaction networks (CRNs) are directed graphs with reactant or product complexes as vertices, and reactions arcs. A CRN is weakly reversible if each of its connected components strongly connected. Weakly can be considered the most important class networks. Now, stoichiometric subspace a network linear span vectors (i.e., difference between complexes). decomposition independent (incidence independent) direct sum subspaces maps) subnetworks equals map) whole network. Decompositions used to study relationships positive steady states system (induced from partitioning set underlying network) those subsystems. In this work, we revisit our novel method finding decomposition, use it expand applicability on (vector) states. We also explore CRNs embedded deficiency zero subnetworks. addition, establish for incidence CRN. determine all forms decompositions network, provide number such decompositions. Lastly, networks, that independence sufficient condition weak reversibility identify subclasses where any reversible.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

On the steady states of weakly reversible chemical reaction networks

A natural condition on the structure of the underlying chemical reaction network, namely weak reversibility, is shown to guarantee the existence of an equilibrium (steady state) in each positive stoichiometric compatibility class for the associated mass-action system. Furthermore, an index formula is given for the set of equilibria in a given stoichiometric compatibility class.

متن کامل

Finding weakly reversible realizations of chemical reaction networks using optimization

An algorithm is given in this paper for the computation of dynamically equivalent weakly reversible realizations with the maximal number of reactions, for chemical reaction networks (CRNs) with mass action kinetics. The original problem statement can be traced back at least 30 years ago. The algorithm uses standard linear and mixed integer linear programming, and it is based on elementary graph...

متن کامل

Solutions of weakly reversible chemical reaction networks are bounded and persistent

We present extensions to chemical reaction network theory which are relevant to the analysis of models of biochemical systems. We show that, for positive initial conditions, solutions of a weakly reversible chemical reaction network are bounded and remain in the positive orthant. Thus, weak reversibility implies persistence as conjectured by Martin Feinberg. Our result provides a qualitative cr...

متن کامل

On persistence and cascade decompositions of chemical reaction networks

New checkable criteria for persistence of chemical reaction networks are proposed, which extend and complement those obtained by the authors in previous work. The new results allow the consideration of reaction rates which are time-varying, thus incorporating the effects of external signals, and also relax the assumption of existence of global conservation laws, thus allowing for inflows (produ...

متن کامل

Computing weakly reversible linearly conjugate chemical reaction networks with minimal deficiency.

Mass-action kinetics is frequently used in systems biology to model the behavior of interacting chemical species. Many important dynamical properties are known to hold for such systems if their underlying networks are weakly reversible and have a low deficiency. In particular, the Deficiency Zero and Deficiency One Theorems guarantee strong regularity with regards to the number and stability of...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Match

سال: 2021

ISSN: ['0340-6253']

DOI: https://doi.org/10.46793/match.87-2.367h